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Software
You can find below links to download the software developed by the NMR team at ICSN.
BATCH (by Ewen Lescop and Bernhard Brutscher, IBS Grenoble)
BATCH is a strategy to speedup the backbone resonance assignment step of small to medium size proteins (<100aa). It includes several tools contained in its name: BEST/ASCOM/Targeted sampling/COBRA and HADAMAC. BATCH is also the name of the computer program developped to facilitate the data processing, analysis and the final backbone resonance assignment step. It represents a new module in NMRView and provides an interface for NMRPipe.
The license is free for academic sites and non commercial use :
Please, send comments or bugs reports to : Lescop
Reference: Lescop E and Brutscher B. «Highly automated protein backbone resonance assignment within a few hours : the "BATCH" strategy and software package.», J Biomol NMR. 2009, 44(1), 43-57.
ASCOM (by Ewen Lescop and Bernhard Brutscher, IBS Grenoble)
ASCOM is a program developped to automatically optimize spectral width in multidimensional experiments based on the previous knowledge of peak positions. ASCOM Version 2.2 exists as three implementations : (1) X=15N or 13C spectral width optimization of a 1H-X correlation plane, (2) combined 15N and 13C spectral widths optimization in a 3D 1H-15N-13C correlation spectrum ; alternatively, the projection angles and tilted spectral width along the projected 15N /13C dimension, (3) combined 1H-X spectral widths optimization of a 1H-X correlation plane. The program is written in Perl language and works on any operating system.
The license is free for academic sites and non commercial use :
Please, send comments or bugs reports to : Lescop
Reference: Lescop E, Schanda P, Rasia R, Brutscher B. « Automated spectral compression for fast multidimensional NMR and increased time resolution in real-time NMR spectroscopy. » J Am Chem Soc. 2007,14;129(10):2756-2757.
Last modified : 10 June 2009
